Analyze data
Calculate RSC from raw RNA counts and your predictions, compute normalized pairwise accuracy, train Ridge with the pairwise difference loss, open files written by the toolkit, or compare predictions with conventional metrics.
Score tables and bundles written by the toolkit open here.
Examples: the score table behind Figure 6c,d (11 models, nine Xenium samples of breast, pancreatic and lung cancer) and a full analysis of one lung cancer sample.
Drop your file hereor use the file picker
Files stay in your browser and are never uploaded. Data privacy
Whole-section correlation, correlation within regions and in larger bins, and AUROC against expert annotations, kept for comparison with RSC. The paper shows that whole-section correlation overstates prediction quality within tissue regions and that Pearson r with the measured RNA expression understates it at fine scales (Fig. 1b,c of the paper).
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